1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR000BGE

doi:10.17989/ENCSR000BGE

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
SRF
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
SRF ChIP-seq protocol PCR2x on human GM12878
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Richard Myers, HAIB
Award
U54HG004576 (Richard Myers, HAIB)
Project
ENCODE
Date submitted
July 18, 2011
Date released
July 18, 2011
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
Fastq files ENCFF000OFM and ENCFF000OFK contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF000OFM (25, 12547305), (36, 53224706); ENCFF000OFK (25, 13747457), (36, 46616535).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens GM12878 cell lineENCBS110ENCENCAB000ALEENCLB559KCI
21Homo sapiens GM12878 cell lineENCBS110ENCENCAB000ALEENCLB559KDT

Files

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File format
Output type
Replicates

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