1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR000DZN

doi:10.17989/ENCSR000DZN

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human GM12878
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Michael Snyder, Stanford
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date submitted
October 29, 2011
Date released
October 29, 2011
Reference Epigenome
ENCSR447YYN 
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
As of March 24, 2017, this experiment has been reanalyzed to reflect the same mapped read length as its control (ENCSR000EYX).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens GM12878 cell lineENCBS630AAAENCAB000AFQENCLB209ABS
11Homo sapiens GM12878 cell lineENCBS630AAAENCAB000AFQENCLB209ABM

Files

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Output type
Replicates

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