Experiment summary for ENCSR018MSO
doi:10.17989/ENCSR018MSO
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ZNF148
- Biosample summary
- Homo sapiens K562 stably expressing ZNF148
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-ZNF148 ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Kevin White, UChicago
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- References
- Aliases
- kevin-white:ZNF148_K562
- Date submitted
- April 27, 2016
- Date released
- December 1, 2017
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged ZNF148 | ENCBS061XWL | ENCGM325OOB | ENCAB728YTO | ENCLB257OJH |
| 3 | 1 | Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged ZNF148 | ENCBS538KOD | ENCGM325OOB | ENCAB728YTO | ENCLB518BGC |
| 4 | 1 | Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged ZNF148 | ENCBS397IBL | ENCGM325OOB | ENCAB728YTO | ENCLB483SSS |
| 1 | 1 | Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged ZNF148 | ENCBS915LIT | ENCGM325OOB | ENCAB728YTO | ENCLB133JTF |