Experiment summary for ENCSR041XML
doi:10.17989/ENCSR041XML
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- SRF
- Biosample summary
- Homo sapiens GM12878
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- SRF ChIP-seq on human GM12878
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- References
- Aliases
- michael-snyder:ChIPss-435
- Date submitted
- April 28, 2016
- Date released
- January 26, 2018
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Submitter comment
- We note that this ChIP-seq experiment was performed using an antibody for which we have provided a compliant primary characterization but no secondary characterization. A secondary characterization using IP-MS was attempted, but the experiment failed. There is no remaining antibody from this lot number and therefore additional secondary characterizations cannot be attempted. However, because the replicate ChIP-seq datasets passed the ENCODE IDR ChIP-seq data quality standards, we are releasing the data to the public.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens GM12878 cell line | ENCBS594YOH | ENCAB238WAL | ENCLB094VWJ |
| 1 | 1 | Homo sapiens GM12878 cell line | ENCBS519VWT | ENCAB238WAL | ENCLB278BBE |