Experiment summary for ENCSR139RDU
doi:10.17989/ENCSR139RDU
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CG12942
- Biosample summary
- Drosophila melanogaster strain CG12942-GFP whole organism embryo (0-24 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG12942
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing CG12942-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CG12942-GFP
- Date submitted
- August 3, 2016
- Date released
- September 29, 2016
- Submitter comment
- ENCFF553NZQ, ENCFF439HSD, ENCFF842GGG, ENCFF009HTO were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Drosophila melanogaster strain CG12942-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG12942 | ENCBS161EDJ | ENCGM952RIT | ENCAB728YTO | ENCLB086UHS |
| 1 | 1 | Drosophila melanogaster strain CG12942-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG12942 | ENCBS880RTY | ENCGM952RIT | ENCAB728YTO | ENCLB491PGC |
| 2 | 1 | Drosophila melanogaster strain CG12942-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG12942 | ENCBS891QZW | ENCGM952RIT | ENCAB728YTO | ENCLB285WQW |