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  3. Homo sapiens
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Experiment summary for ENCSR185QFX

doi:10.17989/ENCSR185QFX

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
ZNF549
Biosample summary
Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-ZNF549 ChIP-seq on human HEK293 cells.
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:HEK_eGFP-ZNF549_FRT_ChIP
Date submitted
December 16, 2016
Date released
July 11, 2018
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
The inconsistent platform warning is due to the archived replicate 1 fastqs being sequenced on HiSeq2000. Those files can use the pooled HiSeq2000 controls (ENCSR598OXI) for further analysis.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549ENCBS716EYGENCGM698AYSENCAB615WUNENCLB847ZIR
21Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549ENCBS327AYJENCGM698AYSENCAB615WUNENCLB794PLP

Files

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Output type
Replicates

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