1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR189YMA

doi:10.17989/ENCSR189YMA

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
VEZF1
Biosample summary
Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-VEZF1 ChIP-seq on human K562
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

ENCODE3 project
Lab
Kevin White, UChicago
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
kevin-white:VEZF1_K562_CRISPR
Date submitted
March 14, 2016
Date released
November 8, 2017
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1ENCBS410RUZENCGM775WTMENCAB728YTOENCLB349LZT
11Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1ENCBS595PGNENCGM775WTMENCAB728YTOENCLB085TGX
21Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1ENCBS641OVLENCGM775WTMENCAB728YTOENCLB234VZX
41Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1ENCBS545PWBENCGM775WTMENCAB728YTOENCLB988UUL

Files

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