1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR423GBK

doi:10.17989/ENCSR423GBK

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
fd85E
Biosample summary
Drosophila melanogaster strain fd85E-GFP whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster FoxP
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing fd85E-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:fd85E-GFP
Date submitted
April 9, 2016
Date released
September 29, 2016
Submitter comment
ENCFF775QRA, ENCFF324WSE, ENCFF381OXE and ENCFF646KAK were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Drosophila melanogaster strain fd85E-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster FoxPENCBS154NVIENCGM553SSHENCAB728YTOENCLB866TZW
21Drosophila melanogaster strain fd85E-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster FoxPENCBS907OKLENCGM553SSHENCAB728YTOENCLB462RSY
11Drosophila melanogaster strain fd85E-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster FoxPENCBS140TFKENCGM553SSHENCAB728YTOENCLB777SAB

Files

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File format
Output type
Replicates

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