1. Pipelines
  2. RNA-seq + CRISPR genome editing followed by RNA-seq + shRNA knockdown followed by RNA-seq + CRISPRi followed by RNA-seq + siRNA knockdown followed by RNA-seq

Bulk RNA-seq

Status
released
Title
Bulk RNA-seq
Assays
RNA-seq, CRISPR genome editing followed by RNA-seq, shRNA knockdown followed by RNA-seq, CRISPRi followed by RNA-seq, siRNA knockdown followed by RNA-seq
Lab
ENCODE Processing Pipeline
Award PI
J. Michael Cherry, Stanford
Reference File Sets
ENCSR151GDH, ENCSR496QMW

Pipeline schematic