Experiment summary for ENCSR042EXZ
doi:10.17989/ENCSR042EXZ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- rn
- Biosample summary
- Drosophila melanogaster strain rn-GFP whole organism pupa (unknown stages) genetically modified (insertion) using site-specific recombination targeting D. melanogaster rn
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing rn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina NovaSeq 6000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:rn_rn-GFP_pupa_1_IP
- Date released
- November 1, 2022
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Drosophila melanogaster strain rn-GFP pupa (unknown stages) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster rn | ENCBS202LNV | ENCGM023TUZ | ENCAB728YTO | ENCLB160APE |
| 2 | 1 | Drosophila melanogaster strain rn-GFP pupa (unknown stages) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster rn | ENCBS212WJO | ENCGM023TUZ | ENCAB728YTO | ENCLB348CGN |