Deeply Profiled Cell Lines

All Uniform batch growth

Assay

Cell Line (batch identifier)

	in situ Hi-C	PRO-cap	intact Hi-C	dilution Hi-C	GRO-cap	Histone ChIP-seq	Mint-ChIP-seq	TF ChIP-seq	RIP-chip	RIP-seq	eCLIP	iCLIP	ATAC-seq	DNase-seq	FAIRE-seq	GM DNase-seq	MNase-seq	5C	ChIA-PET	Bru-seq	BruChase-seq	BruUV-seq	CAGE	CRISPR RNA-seq	CRISPRi RNA-seq	PAS-seq	PRO-seq	RAMPAGE	RNA microarray	RNA-PET	long read RNA-seq	microRNA counts	microRNA-seq	polyA minus RNA-seq	polyA plus RNA-seq	shRNA RNA-seq	siRNA RNA-seq	small RNA-seq	total RNA-seq	DNAme array	MRE-seq	MeDIP-seq	RRBS	WGBS	Repli-chip	Repli-seq	DNA-PET	genotyping array	snATAC-seq	WGS	icLASER	icSHAPE	MS-MS
A549	6					87		262					6	13	1				2				3				2		2	3				1	26			9	11	2			1	1		2		2	2	1
ENCBS423ENC								26																											1					1
ENCBS863VVH								23					1																																				2
ENCBS448ENC																							2							3					2			8

Caco-2		1	1			5	6	2						3				1	2	2	2	1							1		1		1						1	1			1					1	1
ENCBS095ZZD		1	1											1					2	2	2	1									1		1						1
ENCBS072CVQ		1												1						2	2	1									1		1						1										1
ENCBS257JWV							6

GM23338						13	6	16					1	2														1			1	1	2		1			1	2	1									2
ENCBS368AAA						13		8						1														1				1	1		1			1	1
ENCBS373AAA						13		7						1														1				1	1		1			1	1	1
ENCBS155WDP							5	1						1																	1		1						1

HFFc6							6	1						2																	1		1						6
ENCBS252IDB																															1		1						6
ENCBS508JLR																															1		1						6
ENCBS249LEB																															1		1						5

IMR-90	1		1	1		34		16					1	2					2	2	2	1	3						1	3	1		2		3			9	3	2			1	2	1	6		3	1	1
ENCBS370ENC																							3							3					3			9	1
ENCBS373ENC																							3							3					3			9	1
ENCBS007TVF						16

K562	1	6	1		2	20		821	6	26	164	7	58	10	3	46	1	2	11	2	2	1	9	237	74			1	12	6	4	1	3	3	19	258	34	8	62	3	2	1	1	1		6	3	2	3	4	1	1	6
ENCBS476EKR								126					1																																				2
ENCBS039ENC								67						1			1		2										1											1							3
ENCBS175JIH											51

MCF 10A		1	1				6	15						3					2	2	2	1									1		1						1	3			2					3	1
ENCBS401NZE		1	1																	2	2	1									1		1						1
ENCBS967KPZ		1																		2	2	1									1		1						1										1
ENCBS067ENC								4																																1			1					1

OCI-LY7			1			12		2						1					2	2	2	1						1			1		1					1	2	1				1				1	1
ENCBS149SHY			1																1	2	2	1									1		1						1										1
ENCBS928AXI																			1	2	2	1									1		1						1
ENCBS699NWP						6		2

PC-3			1			13		3					1	1					2	2	2	1						1			1		1						2										1
ENCBS596CTT						13		3
ENCBS451OVM						12		2
ENCBS388XJL			1										1							2	2	1									1		1						1										1

WTC11							6	90					2	1					6	1						1					7		1						10
ENCBS448BXM								15
ENCBS474NOC																										1					7		1						2
ENCBS593PKA																										1					7		1						2

endothelial cell of umbilical vein	1	1	1	1		16		14						2	1				2	2	2	1	5						2	2	1	1	1	3	5			1	1	1						6		1	1
ENCBS717AAA						12		3
ENCBS269GQI		1																		2	2	1									1		1						1										1
ENCBS066FEH			1																	2	2	1									1		1						1

mammary epithelial cell	2		1	1		27		3						4					1	2	2	1	1						2		1		3	1	3			1	2	3	1	1	1	2				3
ENCBS091ENC						12		2																																1				1
ENCBS045GHW						11		2
ENCBS956YQM			1																1	2	2	1									1		1						1