Deeply Profiled Cell Lines

All Uniform batch growth

Assay

Cell Line (batch identifier)

	intact Hi-C	PRO-cap	in situ Hi-C	dilution Hi-C	GRO-cap	Histone ChIP-seq	Mint-ChIP-seq	TF ChIP-seq	RIP-chip	RIP-seq	eCLIP	iCLIP	ATAC-seq	DNase-seq	FAIRE-seq	GM DNase-seq	MNase-seq	5C	ChIA-PET	Bru-seq	BruChase-seq	BruUV-seq	CAGE	CRISPR RNA-seq	CRISPRi RNA-seq	PAS-seq	PRO-seq	RAMPAGE	RNA microarray	RNA-PET	long read RNA-seq	microRNA counts	microRNA-seq	polyA minus RNA-seq	polyA plus RNA-seq	shRNA RNA-seq	siRNA RNA-seq	small RNA-seq	total RNA-seq	DNAme array	MRE-seq	MeDIP-seq	RRBS	WGBS	Repli-chip	Repli-seq	DNA-PET	genotyping array	snATAC-seq	WGS	icLASER	icSHAPE	MS-MS
A673	1	1				6		2						2					2	2	2	1									1		1						1										1
ENCBS564CLS	1	1																	2	2	2	1									1		1						1
ENCBS826LEP		1												1					1	2	2	1									1		1						1										1
ENCBS385OLC						6		2

Caco-2	1	1				5	6	2						3				1	2	2	2	1							1		1		1						1	1			1					1	1
ENCBS095ZZD	1	1												1					2	2	2	1									1		1						1
ENCBS072CVQ		1												1						2	2	1									1		1						1										1
ENCBS257JWV							6

Calu3	1	1					6	1						1					1	2	2	1									1		1						1										1
ENCBS992CLK	1	1												1					1	2	2	1									1		1						1
ENCBS961PLX		1												1						2	2	1									1		1						1										1
ENCBS827USO							6

H9						35	18	1						8					1										1		1		1		2				1		1		1	1	1			1	1	1
ENCBS808UWK						19
ENCBS532LWE						15
ENCBS399JWQ						10								1																																		1

HCT116	17	14	8			17	92	43					17	16					34	18	2	1					16		1		1	1	2		1				17	2	1		1						7
ENCBS389ENC								19																																1	1
ENCBS177ZJV	1	1					6	1					1	1					2	1							1												1
ENCBS228RKP	1	1					6	1					1	1					2	1							1												1

HFFc6							6	1						2																	1		1						6
ENCBS252IDB																															1		1						6
ENCBS508JLR																															1		1						6
ENCBS249LEB																															1		1						5

IMR-90	1		1	1		34		16					1	2					2	2	2	1	3						1	3	1		2		3			9	3	2			1	2	1	6		3	1	1
ENCBS370ENC																							3							3					3			9	1
ENCBS373ENC																							3							3					3			9	1
ENCBS007TVF						16

K562	1	6	1		2	20		821	6	26	164	7	58	10	3	46	1	2	11	2	2	1	9	237	74			1	12	6	4	1	3	3	19	258	34	8	62	3	2	1	1	1		6	3	2	3	4	1	1	6
ENCBS476EKR								126					1																																				2
ENCBS039ENC								67						1			1		2										1											1							3
ENCBS175JIH											51

PC-3	1					13		3					1	1					2	2	2	1						1			1		1						2										1
ENCBS596CTT						13		3
ENCBS451OVM						12		2
ENCBS388XJL	1												1							2	2	1									1		1						1										1

WTC11							6	90					2	1					6	1						1					7		1						10
ENCBS448BXM								15
ENCBS474NOC																										1					7		1						2
ENCBS593PKA																										1					7		1						2

endothelial cell of umbilical vein	1	1	1	1		16		14						2	1				2	2	2	1	5						2	2	1	1	1	3	5			1	1	1						6		1	1
ENCBS717AAA						12		3
ENCBS269GQI		1																		2	2	1									1		1						1										1
ENCBS066FEH	1																			2	2	1									1		1						1

mammary epithelial cell	1		2	1		27		3						4					1	2	2	1	1						2		1		3	1	3			1	2	3	1	1	1	2				3
ENCBS091ENC						12		2																																1				1
ENCBS045GHW						11		2
ENCBS956YQM	1																		1	2	2	1									1		1						1