Deeply Profiled Cell Lines

All Uniform batch growth

Assay

Cell Line (batch identifier)

	intact Hi-C	PRO-cap	in situ Hi-C	GRO-cap	dilution Hi-C	Histone ChIP-seq	Mint-ChIP-seq	TF ChIP-seq	RIP-chip	RIP-seq	eCLIP	iCLIP	ATAC-seq	DNase-seq	FAIRE-seq	GM DNase-seq	MNase-seq	5C	ChIA-PET	Bru-seq	BruChase-seq	BruUV-seq	CAGE	CRISPR RNA-seq	CRISPRi RNA-seq	PAS-seq	PRO-seq	RAMPAGE	RNA microarray	RNA-PET	long read RNA-seq	microRNA counts	microRNA-seq	polyA minus RNA-seq	polyA plus RNA-seq	shRNA RNA-seq	siRNA RNA-seq	small RNA-seq	total RNA-seq	DNAme array	MRE-seq	MeDIP-seq	RRBS	WGBS	Repli-chip	Repli-seq	DNA-PET	genotyping array	snATAC-seq	WGS	icLASER	icSHAPE	MS-MS
GM23338						13	6	16					1	2														1			1	1	2		1			1	2	1									2
ENCBS368AAA						13		8						1														1				1	1		1			1	1
ENCBS373AAA						13		7						1														1				1	1		1			1	1	1
ENCBS155WDP							5	1						1																	1		1						1

H1						55		88	1					4	1			1	3				4			1			1	1	7	1	4	3	10			4	4	2	2	1	6	3	1			2					2
ENCBS111ENC								33						1																										2	1		1	2				1
ENCBS854AAA								18
ENCBS380OBH								15

H9						35	18	1						8					1										1		1		1		2				1		1		1	1	1			1	1	1
ENCBS808UWK						19
ENCBS532LWE						15
ENCBS399JWQ						10								1																																		1

HCT116	17	14	8			17	92	43					17	16					34	18	2	1					16		1		1	1	2		1				17	2	1		1						7
ENCBS389ENC								19																																1	1
ENCBS177ZJV	1	1					6	1					1	1					2	1							1												1
ENCBS228RKP	1	1					6	1					1	1					2	1							1												1

HepG2	1		1			15		842	2		124		2	3	1			1	5	2	2	1	6	188					7	2	3	1	2	3	11	243		3	7	3	1		2	2		6		2	3	3		1
ENCBS114ENC								42						1																										2	1		1					1
ENCBS638AAA						1		26										1											1
ENCBS621TAB											26

K562	1	6	1	2		20		821	6	26	164	7	58	10	3	46	1	2	11	2	2	1	9	237	74			1	12	6	4	1	3	3	19	258	34	8	62	3	2	1	1	1		6	3	2	3	4	1	1	6
ENCBS476EKR								126					1																																				2
ENCBS039ENC								67						1			1		2										1											1							3
ENCBS175JIH											51

MCF-7	1					18		159					1	8	3			1	7	2	2	1	3						7	3	1	1	2	1	5		1	7	2	2			5			6		2	3
ENCBS056AAA								19
ENCBS789UPK						13		3
ENCBS967MVZ						13		3

PC-3	1					13		3					1	1					2	2	2	1						1			1		1						2										1
ENCBS596CTT						13		3
ENCBS451OVM						12		2
ENCBS388XJL	1												1							2	2	1									1		1						1										1

PC-9	1					13		3						2					2	2	2	1									1		1						1										1
ENCBS177ANS						13		3
ENCBS987JQH						13		3
ENCBS739NKR	1													1					2	2	2	1									1		1						1

endothelial cell of umbilical vein	1	1	1		1	16		14						2	1				2	2	2	1	5						2	2	1	1	1	3	5			1	1	1						6		1	1
ENCBS717AAA						12		3
ENCBS269GQI		1																		2	2	1									1		1						1										1
ENCBS066FEH	1																			2	2	1									1		1						1

mammary epithelial cell	1		2		1	27		3						4					1	2	2	1	1						2		1		3	1	3			1	2	3	1	1	1	2				3
ENCBS091ENC						12		2																																1				1
ENCBS045GHW						11		2
ENCBS956YQM	1																		1	2	2	1									1		1						1