Deeply Profiled Cell Lines

All Uniform batch growth

Showing 3793 results

Assay

Cell Line (batch identifier)

	PRO-cap	intact Hi-C	in situ Hi-C	GRO-cap	dilution Hi-C	Histone ChIP-seq	Mint-ChIP-seq	TF ChIP-seq	RIP-chip	RIP-seq	eCLIP	iCLIP	ATAC-seq	DNase-seq	FAIRE-seq	GM DNase-seq	MNase-seq	5C	ChIA-PET	Bru-seq	BruChase-seq	BruUV-seq	CAGE	CRISPR RNA-seq	CRISPRi RNA-seq	PAS-seq	RAMPAGE	RNA microarray	RNA-PET	long read RNA-seq	microRNA counts	microRNA-seq	polyA minus RNA-seq	polyA plus RNA-seq	shRNA RNA-seq	siRNA RNA-seq	small RNA-seq	total RNA-seq	DNAme array	MRE-seq	MeDIP-seq	RRBS	WGBS	Repli-chip	Repli-seq	DNA-PET	genotyping array	snATAC-seq	WGS	icLASER	icSHAPE	MS-MS
A673	1	1				6		2						2					2	2	2	1								1		1						1										1
ENCBS564CLS	1	1																	2	2	2	1								1		1						1
ENCBS826LEP	1													1					1	2	2	1								1		1						1										1
ENCBS385OLC						6		2

Caco-2	1	1				5	6	2						3				1	2	2	2	1						1		1		1						1	1			1					1	1
ENCBS095ZZD	1	1												1					2	2	2	1								1		1						1
ENCBS072CVQ	1													1						2	2	1								1		1						1										1
ENCBS257JWV							6

Calu3	1	1					6	1						1					1	2	2	1								1		1						1										1
ENCBS992CLK	1	1												1					1	2	2	1								1		1						1
ENCBS961PLX	1													1						2	2	1								1		1						1										1
ENCBS827USO							6

H1						51		77	1					3	1			1	3				4			1			1	7	1	4	3	9			4	4	2			1	2	1			1					2
ENCBS111ENC								33						1																									2			1	1				1
ENCBS854AAA								17
ENCBS380OBH								13

H9						33	18	1						7					1									1		1		1						1					1	1				1
ENCBS808UWK						19
ENCBS532LWE						15
ENCBS654ADT							6	1																						1		1						1

HFFc6							6	1						1																1		1						6
ENCBS252IDB																														1		1						6
ENCBS508JLR																														1		1						6
ENCBS249LEB																														1		1						5

HepG2		1	1			15		825	2		105		2	2	1			1	4	2	2	1	6	187				6	2	3	1	2	3	11	232		3	6	3			2	2		6		2	3	3		1
ENCBS114ENC								40																															2			1					1
ENCBS638AAA						1		26										1										1
ENCBS308ZPA											25

K562	6	1	1	2		19		771	6	5	145	3	58	7	3	46	1	2	9	2	2	1	9	229	74		1	10	6	4	1	2	3	19	228	34	7	61	3	1	1	1	1		6	3	2	3	4	1	1	6
ENCBS476EKR								110					1																																			2
ENCBS039ENC								64									1											1											1							3
ENCBS175JIH											42

MCF 10A	1	1					6	13						3					2	2	2	1								1		1						1	3			2					3	1
ENCBS401NZE	1	1																		2	2	1								1		1						1
ENCBS967KPZ	1																			2	2	1								1		1						1										1
ENCBS067ENC								4																															1			1					1

OCI-LY7		1				10		2						1					2	2	2	1					1			1		1					1	2	1				1				1	1
ENCBS149SHY		1																	1	2	2	1								1		1						1										1
ENCBS928AXI																			1	2	2	1								1		1						1
ENCBS699NWP						5		2

PC-3		1				13		3					1	1					2	2	2	1					1			1		1						2										1
ENCBS596CTT						13		3
ENCBS451OVM						12		2
ENCBS388XJL		1											1							2	2	1								1		1						1										1

PC-9		1				13		3						2					2	2	2	1								1		1						1										1
ENCBS177ANS						13		3
ENCBS987JQH						13		3
ENCBS739NKR		1												1					2	2	2	1								1		1						1

mammary epithelial cell		1	2		1	19		3						3					1	2	2	1	1					1		1		3	1	2			1	2	3			1	1				2
ENCBS091ENC						12		2																															1				1
ENCBS045GHW						11		2
ENCBS956YQM		1																	1	2	2	1								1		1						1

Deeply Profiled Cell Lines

Showing 3793 results

Assay type

Assay title

Status

Perturbation

Target category

Target of assay

Organism

Biosample classification

Biosample

Organ

Cell

Systems

Life stage

Sex

Biosample treatment

Project

RFA

Genome assembly

Available file types

Platform

Run type

Read length (nt)

Mapped read length (nt)

Library fragment size (nt)

Library material

Library depleted in

Lab

Replication type

Cellular component

Library construction platform

Library construction method

Audit category:

Audit category:

Audit category:

replicates.library.biosample.biosample_ontology.term_id