Deeply Profiled Cell Lines – ENCODE

All Uniform batch growth

Showing 1606 results

Assay

Cell Line (batch identifier)

	intact Hi-C	in situ Hi-C	PRO-cap	dilution Hi-C	Histone ChIP-seq	Mint-ChIP-seq	TF ChIP-seq	RIP-chip	eCLIP	ATAC-seq	DNase-seq	FAIRE-seq	5C	ChIA-PET	Bru-seq	BruChase-seq	BruUV-seq	CAGE	CRISPR RNA-seq	RNA microarray	RNA-PET	long read RNA-seq	microRNA counts	microRNA-seq	polyA minus RNA-seq	polyA plus RNA-seq	shRNA RNA-seq	small RNA-seq	total RNA-seq	DNAme array	RRBS	WGBS	Repli-seq	genotyping array	snATAC-seq	WGS	icSHAPE
Caco-2	1		1		5	6	2				3		1	2	2	2	1			1		1		1					1	1	1			1	1
ENCBS095ZZD	1		1								1			2	2	2	1					1		1					1
ENCBS072CVQ			1								1				2	2	1					1		1					1						1
ENCBS257JWV						6

HepG2	1	1			15		825	2	105	2	2	1	1	4	2	2	1	6	187	6	2	3	1	2	3	11	232	3	6	3	2	2	6	2	3	3	1
ENCBS114ENC							40																							2	1			1
ENCBS638AAA					1		26						1							1
ENCBS308ZPA									25

PC-9	1				13		3				2			2	2	2	1					1		1					1						1
ENCBS177ANS					13		3
ENCBS987JQH					13		3
ENCBS739NKR	1										1			2	2	2	1					1		1					1

Panc1	1	1			7		7			1	1			2	2	2	1			1		1		1		1			1	3	2			3	1	1
ENCBS378LMT	1									1				2	2	2	1					1		1					1						1
ENCBS425ENC							5																			1				1	1			2
ENCBS254ODH										1				2	2	2	1

mammary epithelial cell	1	2		1	19		3				3			1	2	2	1	1		1		1		3	1	2		1	2	3	1	1		2
ENCBS091ENC					12		2																							1		1
ENCBS045GHW					11		2
ENCBS956YQM	1													1	2	2	1					1		1					1