Deeply Profiled Cell Lines – ENCODE

All Uniform batch growth

Showing 681 results

Assay

Cell Line (batch identifier)

	intact Hi-C	PRO-cap	in situ Hi-C	Histone ChIP-seq	Mint-ChIP-seq	TF ChIP-seq	RIP-chip	ATAC-seq	DNase-seq	FAIRE-seq	5C	ChIA-PET	Bru-seq	BruChase-seq	BruUV-seq	CAGE	PAS-seq	PRO-seq	RAMPAGE	RNA microarray	RNA-PET	long read RNA-seq	microRNA counts	microRNA-seq	polyA minus RNA-seq	polyA plus RNA-seq	small RNA-seq	total RNA-seq	DNAme array	MRE-seq	MeDIP-seq	RRBS	WGBS	Repli-chip	genotyping array	snATAC-seq	MS-MS
A673	1	1		6		2			2			2	2	2	1							1		1				1								1
ENCBS564CLS	1	1										2	2	2	1							1		1				1
ENCBS826LEP		1							1			1	2	2	1							1		1				1								1
ENCBS385OLC				6		2

Caco-2	1	1		5	6	2			3		1	2	2	2	1					1		1		1				1	1			1			1	1
ENCBS095ZZD	1	1							1			2	2	2	1							1		1				1
ENCBS072CVQ		1							1				2	2	1							1		1				1								1
ENCBS257JWV					6

Calu3	1	1			6	1			1			1	2	2	1							1		1				1								1
ENCBS992CLK	1	1							1			1	2	2	1							1		1				1
ENCBS961PLX		1							1				2	2	1							1		1				1								1
ENCBS827USO					6

H1				55		88	1		4	1	1	3				4	1			1	1	7	1	4	3	10	4	4	2	2	1	6	3	1	2		2
ENCBS111ENC						33			1																				2	1		1	2		1
ENCBS854AAA						18
ENCBS380OBH						15

HCT116	17	14	8	17	92	43		17	16			34	18	2	1			16		1		1	1	2		1		17	2	1		1				7
ENCBS389ENC						19																							1	1
ENCBS177ZJV	1	1			6	1		1	1			2	1					1										1
ENCBS228RKP	1	1			6	1		1	1			2	1					1										1

OCI-LY7	1			12		2			1			2	2	2	1				1			1		1			1	2	1				1		1	1
ENCBS149SHY	1											1	2	2	1							1		1				1								1
ENCBS928AXI												1	2	2	1							1		1				1
ENCBS699NWP				6		2

PC-9	1			13		3			2			2	2	2	1							1		1				1								1
ENCBS177ANS				13		3
ENCBS987JQH				13		3
ENCBS739NKR	1								1			2	2	2	1							1		1				1