Experiment summary for ENCSR000BLX
doi:10.17989/ENCSR000BLX
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- Control ChIP-seq (protocol v041610.2) on SK-N-SH treated with 6uM retinoic acid for 48 hours
- Treatments
- 6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- Date submitted
- July 18, 2011
- Date released
- July 18, 2011
- Reference Epigenome
- ENCSR192FFL
- Annotation (BPNet-model)
- Tags
- Registry of cCREs
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS404ENC | ENCAB000AXU | ENCLB559JHX |
| 2 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS404ENC | ENCAB000AXU | ENCLB559JHW |