Experiment summary for ENCSR000CPV
doi:10.17989/ENCSR000CPV
Summary
- Status
- released
- Assay
- polyA minus RNA-seq
- Biosample summary
- Homo sapiens skeletal muscle myoblast
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- RNA-seq on human HSMM whole cell long polyA- RNA
- Treatments
- duplex-specific nuclease (DSN) normalization
- Nucleic acid type
- RNA
- Depleted in
- polyadenylated mRNA, rRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR402QNO
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- GEO-obsolete:GSM765391
- UCSC-ENCODE-hg19:wgEncodeEH000177
- GEO:GSE78597
- Date submitted
- July 13, 2011
- Date released
- October 17, 2011
- Submitter comment
- Fastq file ENCFF000GOO contains reads of mixed lengths. Read lengths followed by respective number of reads: (72, 83147535), (76, 40557587)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens skeletal muscle myoblast primary cell | ENCBS470ENC | ENCLB555ATF |
| 1 | 1 | Homo sapiens skeletal muscle myoblast primary cell | ENCBS469ENC | ENCLB555ATG |