1. Experiments
  2. ATAC-seq
  3. Homo sapiens
  4. foreskin keratinocyte

Experiment summary for ENCSR247PVM

doi:10.17989/ENCSR247PVM

Summary

Status
released
Assay
ATAC-seq
Biosample summary
Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1 day
Biosample Type
primary cell
Replication type
anisogenic
Description
ATAC-seq on primary keratinocytes in day 1.5 of differentiation
Treatments
1.2 mM calcium (CHEBI:86158) for 1 day
Nucleic acid type
DNA
RNA integrity number
9 [2-4]9.1 [1-1]9 [2-1]9 [2-2]9 [2-3]9.1 [1-2]9.1 [1-3]

Attribution

Genomics of Gene Regulation Project
Lab
Will Greenleaf, Stanford
Award
U01HG007919 (Michael Snyder, Stanford)
Project
GGR
External resources
Aliases
michael-snyder:ggr-skin-atacseq-day15
Date submitted
January 27, 2017
Date released
October 10, 2017
Treatment Time Series
ENCSR968JDE 
Annotation (gkmsvm-model)

Anisogenic replicates

Anisogenic replicate
Technical replicate
Summary
Biosample
Library
24Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS839SEFENCLB811FRL
11Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS819VZUENCLB019BEC
21Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS839SEFENCLB660GSC
22Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS839SEFENCLB849HRI
23Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS839SEFENCLB027OPY
12Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS819VZUENCLB344ZFY
13Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 dayENCBS819VZUENCLB139QTU

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