Experiment summary for ENCSR401IFS

doi:10.17989/ENCSR401IFS

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
Y75B8A.6
Biosample summary
Caenorhabditis elegans strain RW12275 (st12275[Y75B8A.6 ::TY1::EGFP::3xFLAG] III) whole organism L4 larva (48 hours) at L1 larva starved after bleaching stage genetically modified (insertion) using CRISPR targeting C. elegans Y75B8A.6
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic worms expressing Y75B8A.6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
valerie-reinke:Y75B8A.6_RW12275_L4larva_1_IP
Date released
November 1, 2022

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain RW12275 (st12275[Y75B8A.6 ::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y75B8A.6ENCBS587YFGENCGM665YFVENCAB728YTOENCLB010KUD
21Caenorhabditis elegans strain RW12275 (st12275[Y75B8A.6 ::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y75B8A.6ENCBS509ITCENCGM665YFVENCAB728YTOENCLB881QDH