Experiment summary for ENCSR404FPI
doi:10.17989/ENCSR404FPI
Summary
- Status
- released
- Assay
- ChIA-PET
- Target
- CTCF
- Biosample summary
- Homo sapiens endothelial cell of umbilical vein newborn
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- CTCF ChIA-PET in HUVEC
- Nucleic acid type
- DNA
- Size range
- 300-600 [1-1]350-600 [2-1]350-600 [3-1]
- Lysis method
- SDS
- Fragmentation methods
- sonication (Branson Sonifier 250)
- Size selection method
- BluePippin
- Platform
- Illumina NovaSeq 6000
- Controls
Attribution
ENCODE4 project
- Lab
- Charles Lee
- Award
- 3UM1HG009409-04S1 (Charles Lee)
- Project
- ENCODE
- External resources
- Aliases
- yijun-ruan:HUVEC_CTCF
- Date submitted
- March 18, 2021
- Date released
- April 6, 2021
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS046NPX | ENCAB635SXP | ENCLB678FKH |
| 2 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS519IYJ | ENCAB635SXP | ENCLB041GKF |
| 3 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS606AFI | ENCAB635SXP | ENCLB473TPN |