Experiment summary for ENCSR421CGL
doi:10.17989/ENCSR421CGL
Summary
- Status
- released
- Assay
- HiC (intact Hi-C)
- Biosample summary
- Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
- Biosample Type
- primary cell
- Replication type
- unreplicated
- Description
- LP6 CD4+ T Cells activated intact Hi-C
- Treatments
- anti-CD3 and anti-CD28 coated beads for 36 hours
- Nucleic acid type
- DNA
- Library starting quantity
- 1000000cells [2-3]1000000cells [2-1]1000000cells [2-2]1300000cells [2-4]
- Size range
- 100-400
- Fragmentation methods
- chemical (micrococcal nuclease)
- Size selection method
- SPRI beads
- Platform
- Ultima Genomics
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:intact-CD4-activated
- Date released
- November 8, 2022
- Annotation (genotyping)
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 3 | Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 36 hours | ENCBS949CQQ | ENCLB541PRC |
| 2 | 1 | Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 36 hours | ENCBS949CQQ | ENCLB898BNW |
| 2 | 2 | Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 36 hours | ENCBS949CQQ | ENCLB978ZBF |
| 2 | 4 | Homo sapiens male adult (20 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 36 hours | ENCBS949CQQ | ENCLB050GOB |