Experiment summary for ENCSR428XQQ
doi:10.17989/ENCSR428XQQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- lim-7
- Biosample summary
- Caenorhabditis elegans strain OP779 (wgIs779(lim-7::TY1 EGFP 3xFLAG(P000007_A03_13C13);unc-119(+));unc-119 (tm4063)) whole organism L4 larva (48.5 hours) at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans lim-7
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic worms expressing lim-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina NovaSeq 6000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- valerie-reinke:lim-7_OP779_L4larva_1_IP
- Date released
- November 1, 2022
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP779 (wgIs779(lim-7::TY1 EGFP 3xFLAG(P000007_A03_13C13);unc-119(+));unc-119 (tm4063)) L4 larva (48.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans lim-7 | ENCBS956ZVX | ENCGM982MIK | ENCAB728YTO | ENCLB891YPR |
| 2 | 1 | Caenorhabditis elegans strain OP779 (wgIs779(lim-7::TY1 EGFP 3xFLAG(P000007_A03_13C13);unc-119(+));unc-119 (tm4063)) L4 larva (48.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans lim-7 | ENCBS096ATH | ENCGM982MIK | ENCAB728YTO | ENCLB949YSU |