Experiment summary for ENCSR573APS
doi:10.17989/ENCSR573APS
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- pes-1
- Biosample summary
- Caenorhabditis elegans strain RW12239 (st12239[pes-1::TY1::EGFP::3xFLAG] IV) whole organism early embryo (1 hour) using egg bleaching genetically modified (insertion) using CRISPR targeting C. elegans pes-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic worms expressing pes-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina NovaSeq 6000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- valerie-reinke:pes-1_RW12239_earlyembryonic_1_IP
- Date released
- November 1, 2022
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain RW12239 (st12239[pes-1::TY1::EGFP::3xFLAG] IV) early embryo (1 hour) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans pes-1 | ENCBS250FDD | ENCGM079RDD | ENCAB728YTO | ENCLB544ADT |
| 1 | 1 | Caenorhabditis elegans strain RW12239 (st12239[pes-1::TY1::EGFP::3xFLAG] IV) early embryo (1 hour) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans pes-1 | ENCBS137HCA | ENCGM079RDD | ENCAB728YTO | ENCLB792DDG |