Experiment summary for ENCSR581NLU
doi:10.17989/ENCSR581NLU
Summary
- Status
- released
- Assay
- single-cell RNA sequencing assay (snRNA-seq)
- Biosample summary
- Mus musculus strain B6CASTF1/J gastrocnemius tissue nuclear fraction male postnatal (14 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 12k
- Nucleic acid type
- RNA
- Library starting quantity
- 2604cells
- Average fragment size
- 432
- Library construction method
- Parse Single Cell Whole Transcriptome Kit
- Strand specificity
- Strand-specific (mixed)
- Platform
- Illumina NextSeq 2000
Attribution
ENCODE4 project
- Lab
- Ali Mortazavi, UCI
- Award
- UM1HG009443 (Barbara Wold, Caltech)
- Project
- ENCODE
- Aliases
- ali-mortazavi:experiment_illumina_sr_B6Cast_gastrocnemius_P14_male_normal_12k
- Date released
- March 25, 2022
- Organism Development Series
- ENCSR098VHO
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 91 | 1 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB784OSW |
| 92 | 1 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB615ZSX |
| 2 | 2 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB700PHX |
| 1 | 3 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB274LVT |
| 1 | 1 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB508YKY |
| 1 | 5 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB065MJW |
| 2 | 4 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB993HSH |
| 1 | 2 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB196EQF |
| 2 | 5 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB865NBC |
| 1 | 4 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB498MMP |
| 2 | 1 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB173NDS |
| 2 | 3 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB567RWD |