Experiment summary for ENCSR620NWG
doi:10.17989/ENCSR620NWG
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- SMC3
- Biosample summary
- Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- SMC3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
- Treatments
- 100 nM dexamethasone (CHEBI:41879) for 0.5 hours
- Nucleic acid type
- DNA
- Library starting quantity
- 7ng
- Size range
- >200
- Fragmentation methods
- sonication (Bioruptor Twin)
- Size selection method
- dual SPRI
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 4000
- Controls
Attribution
Genomics of Gene Regulation Project
- Lab
- Tim Reddy, Duke
- Award
- U01HG007900 (Tim Reddy, Duke)
- Project
- GGR
- External resources
- Aliases
- tim-reddy:A549.SMC3.dex.00h30m
- Date submitted
- March 6, 2018
- Date released
- March 15, 2018
- Treatment Time Series
- ENCSR376GQA
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 0.5 hours | ENCBS475OAC | ENCAB501DLL | ENCLB719QKT |
| 2 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 0.5 hours | ENCBS911XCD | ENCAB501DLL | ENCLB826ODD |
| 3 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 0.5 hours | ENCBS848GZD | ENCAB501DLL | ENCLB366KEL |