Experiment summary for ENCSR623HHL
doi:10.17989/ENCSR623HHL
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- snpc-4
- Biosample summary
- Caenorhabditis elegans strain YL551 whole organism hermaphrodite young adult 60 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans snpc-4
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing SNPC-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:SNPC-4-YL551-yAd
- Date submitted
- July 29, 2015
- Date released
- November 22, 2017
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain YL551 hermaphrodite young adult 60 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans snpc-4 | ENCBS691DTO | ENCGM794TFO | ENCAB435FBQ | ENCLB676PQN |
| 1 | 1 | Caenorhabditis elegans strain YL551 hermaphrodite young adult 60 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans snpc-4 | ENCBS421CBO | ENCGM794TFO | ENCAB435FBQ | ENCLB231KBC |