Experiment summary for ENCSR643BKM
doi:10.17989/ENCSR643BKM
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- Y22D7AL.16
- Biosample summary
- Caenorhabditis elegans strain OP615 (unc-119(tm4063) III; wgIs615) whole organism late embryo 4.5 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans Y22D7AL.16
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing Y22D7AL.16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:Y22D7AL.16-OP615-LE
- Date submitted
- October 4, 2016
- Date released
- October 11, 2016
- Submitter comment
- ENCFF615LPW, ENCFF326USC, ENCFF657OXS, ENCFF260MWA were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP615 (unc-119(tm4063) III; wgIs615) mixed sex late embryo 4.5 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans Y22D7AL.16 | ENCBS207AFW | ENCGM583ZMS | ENCAB728YTO | ENCLB321QUZ |
| 1 | 1 | Caenorhabditis elegans strain OP615 (unc-119(tm4063) III; wgIs615) mixed sex late embryo 4.5 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans Y22D7AL.16 | ENCBS356TCC | ENCGM583ZMS | ENCAB728YTO | ENCLB998ERT |