Experiment summary for ENCSR668OMI
doi:10.17989/ENCSR668OMI
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- rpc-1
- Biosample summary
- Caenorhabditis elegans strain YL517 whole organism hermaphrodite young adult genetically modified (insertion) using bombardment targeting C. elegans rpc-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- E-Gel
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:RPC-1-YL517-yAd
- Date submitted
- July 30, 2015
- Date released
- March 9, 2018
- Submitter comment
- ENCFF798XQR, ENCFF006YJJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files. This experiment was completed during modENCODE and has lower read depth than the current modERN standard.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain YL517 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans rpc-1 | ENCBS091WKR | ENCGM534DFO | ENCAB435FBQ | ENCLB424SUJ |
| 1 | 1 | Caenorhabditis elegans strain YL517 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans rpc-1 | ENCBS968XEY | ENCGM534DFO | ENCAB435FBQ | ENCLB133MWE |
| 3 | 1 | Caenorhabditis elegans strain YL517 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans rpc-1 | ENCBS663UXS | ENCGM534DFO | ENCAB435FBQ | ENCLB370HFI |