Experiment summary for ENCSR684GHA
doi:10.17989/ENCSR684GHA
Summary
- Status
- released
- Assay
- ChIP-seq (Control ChIP-seq)
- Control type
- input library
- Biosample summary
- Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TOX2 treated with 6 μM all-trans-retinoic acid for 48 hours
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- SK-N-SH immortalized cell line (treated with 6 μM all-trans-retinoic acid for 48 hours) stably expressing C-terminal eGFP-TOX2 fusion protein.
- Treatments
- 6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 4000
Attribution
ENCODE4 project
- Lab
- Michael Snyder, Stanford
- Award
- UM1HG009442 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:SK-N-SH_RA_eGFP-TOX2_CRISPR_ChIP_input
- Date submitted
- January 13, 2018
- Date released
- August 3, 2020
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting H. sapiens TOX2 treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS805KSW | ENCGM485KZT | ENCLB563XZP |