Experiment summary for ENCSR728NFJ
doi:10.17989/ENCSR728NFJ
Summary
- Status
- released
- Assay
- single-cell RNA sequencing assay (snRNA-seq)
- Biosample summary
- Mus musculus strain B6CASTF1/J gastrocnemius tissue nuclear fraction male postnatal (14 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 1k
- Nucleic acid type
- RNA
- Library starting quantity
- 42cells
- Average fragment size
- 407
- Library construction method
- Parse Single Cell Whole Transcriptome Kit
- Strand specificity
- unstranded
- Platform
- Illumina NextSeq 2000
Attribution
ENCODE4 project
- Lab
- Ali Mortazavi, UCI
- Award
- UM1HG009443 (Barbara Wold, Caltech)
- Project
- ENCODE
- Aliases
- ali-mortazavi:experiment_illumina_sr_B6Cast_gastrocnemius_P14_male_normal_1k
- Date released
- March 25, 2022
- Organism Development Series
- ENCSR098VHO
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS085JPI | ENCLB546MVT |
| 2 | 1 | Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction | ENCBS759QMD | ENCLB578XRO |