Experiment summary for ENCSR767DFK

doi:10.17989/ENCSR767DFK

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
SMC3
Biosample summary
Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 12 hours
Biosample Type
cell line
Replication type
isogenic
Description
SMC3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
Treatments
100 nM dexamethasone (CHEBI:41879) for 12 hours
Nucleic acid type
DNA
Library starting quantity
7ng
Size range
>200
Fragmentation methods
sonication (Bioruptor Twin)
Size selection method
dual SPRI
Controls

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:A549.SMC3.dex.12h00m
Date submitted
March 6, 2018
Date released
March 15, 2018
Treatment Time Series
ENCSR376GQA 
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag RegulomeDB_2_1

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hoursENCBS358PMOENCAB501DLLENCLB715DRH
31Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hoursENCBS793IHCENCAB501DLLENCLB500WPM
21Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hoursENCBS311ILNENCAB501DLLENCLB984ZSW