Experiment summary for ENCSR823CLM
doi:10.17989/ENCSR823CLM
Summary
- Status
- released
- Assay
- single-cell RNA sequencing assay (snRNA-seq)
- Biosample summary
- Mus musculus strain B6CASTF1/J gastrocnemius tissue nuclear fraction male postnatal (25 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Illumina short-read B6/Cast F1 gastrocnemius P25 male normal 12k
- Nucleic acid type
- RNA
- Library starting quantity
- 2604cells
- Average fragment size
- 432
- Library construction method
- Parse Single Cell Whole Transcriptome Kit
- Strand specificity
- Strand-specific (mixed)
- Platform
- Illumina NextSeq 2000
Attribution
ENCODE4 project
- Lab
- Ali Mortazavi, UCI
- Award
- UM1HG009443 (Barbara Wold, Caltech)
- Project
- ENCODE
- Aliases
- ali-mortazavi:experiment_illumina_sr_B6Cast_gastrocnemius_P25_male_normal_12k
- Date released
- March 25, 2022
- Organism Development Series
- ENCSR098VHO
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 91 | 1 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS581ENU | ENCLB126VML |
| 92 | 1 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS624IZL | ENCLB043WMO |
| 1 | 4 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS581ENU | ENCLB287NJF |
| 1 | 3 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS581ENU | ENCLB931GBA |
| 2 | 2 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS624IZL | ENCLB154NEL |
| 1 | 1 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS581ENU | ENCLB849HOH |
| 2 | 4 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS624IZL | ENCLB610DKC |
| 1 | 5 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS581ENU | ENCLB495REF |
| 2 | 3 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS624IZL | ENCLB560PJG |
| 1 | 2 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS581ENU | ENCLB212TPW |
| 2 | 1 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS624IZL | ENCLB841NQC |
| 2 | 5 | Mus musculus strain B6CASTF1/J male postnatal (25 days) gastrocnemius tissue nuclear fraction | ENCBS624IZL | ENCLB459PAM |