Experiment summary for ENCSR837VHE

doi:10.17989/ENCSR837VHE

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours
Biosample Type
cell line
Replication type
isogenic
Description
DNase-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
Treatments
100 nM dexamethasone (CHEBI:41879) for 2 hours
Nucleic acid type
DNA
Library starting quantity
220ng
Size selection method
gel
Controls

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:t2_dnase_seq
Date submitted
March 2, 2016
Date released
May 5, 2016
Treatment Time Series
ENCSR482QFS 
Annotation (gkmsvm-model)
Submitter comment
DNase-seq libraries were sequenced with four barcodes per lane to generate 50 bp single-end reads, of which only the first 20 bp were genomic DNA due to MmeI digestion (see Song and Crawford 2010).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 2 hoursENCBS549TVNENCLB326FVP
21Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 2 hoursENCBS191VYOENCLB613CCB
41Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 2 hoursENCBS157WWDENCLB033FLH
51Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 2 hoursENCBS570PSFENCLB546RRH