Experiment summary for ENCSR889PUP
doi:10.17989/ENCSR889PUP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- hmbx-1
- Biosample summary
- Caenorhabditis elegans strain OP656 (unc-119 (tm4063) III; wgIs656) whole organism early embryo 45 minutes post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans hmbx-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing HMBX-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:HMBX-1-OP656-EE
- Date submitted
- October 4, 2016
- Date released
- October 11, 2016
- Submitter comment
- ENCFF357GIB, ENCFF092EEF, ENCFF457JXB, ENCFF809OBJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP656 (unc-119 (tm4063) III; wgIs656) mixed sex early embryo 45 minutes post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans hmbx-1 | ENCBS015MDH | ENCGM212KJV | ENCAB728YTO | ENCLB818AUP |
| 2 | 1 | Caenorhabditis elegans strain OP656 (unc-119 (tm4063) III; wgIs656) mixed sex early embryo 45 minutes post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans hmbx-1 | ENCBS188TXX | ENCGM212KJV | ENCAB728YTO | ENCLB545YKR |