Experiment summary for ENCSR955ZWH
doi:10.17989/ENCSR955ZWH
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- T07F8.4
- Biosample summary
- Caenorhabditis elegans strain OP478 (unc-119(tm4063) III; wgIs478) whole organism hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans T07F8.4
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing T07F8.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:T07F8.4-OP478-yAd
- Date submitted
- July 29, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF626IXM, ENCFF909FDU, ENCFF365TXF, ENCFF033ALM were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP478 (unc-119(tm4063) III; wgIs478) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans T07F8.4 | ENCBS569GGK | ENCGM874WJC | ENCAB728YTO | ENCLB528WAD |
| 1 | 1 | Caenorhabditis elegans strain OP478 (unc-119(tm4063) III; wgIs478) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans T07F8.4 | ENCBS624UVV | ENCGM874WJC | ENCAB728YTO | ENCLB589EUR |