Experiment summary for ENCSR973XTF
doi:10.17989/ENCSR973XTF
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Target
- zip-5
- Biosample summary
- Caenorhabditis elegans strain VC1392 (zip-5(gk646)_V) whole organism 650 minutes post synchronization using egg bleaching genetically modified (mutagenesis) using mutagen treatment targeting C. elegans zip-5
- Biosample Type
- whole organisms
- Replication type
- unreplicated
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- 350-600
- Extraction method
- Trizol
- Fragmentation methods
- shearing (Covaris generic)
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 2500, Illumina NextSeq 500
Attribution
modERN project
- Lab
- Robert Waterston, UW
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- robert-waterston:experiment_VC1392_650_1
- Date submitted
- December 22, 2017
- Date released
- March 22, 2019
- Organism Development Series
- ENCSR170SEJ
- Submitter comment
- Analysis of this data is in progress
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain VC1392 (zip-5(gk646)_V) 650 minutes post synchronization using egg bleaching whole organism genetically modified (mutagenesis) using mutagen treatment targeting C. elegans zip-5 | ENCBS087EWO | ENCGM850NVN | ENCLB596TJG |