• Functional Genomics data
    • Experiment search
    • Experiment matrix
    • ChIP-seq matrix
    • Human and mouse body maps
    • Functional genomics series
    • Single-cell experiments
    • Functional Characterization data
    • Experiment search
    • Experiment matrix
    • Cloud Resources
    • AWS Open Data
    • Azure Open Datasets
    • Collections
    • RNA-protein interactions (ENCORE)
    • Epigenomes from four individuals (ENTEx)
    • Rush Alzheimer’s disease study
    • Stem cell differentiation
    • Deeply profiled cell lines
    • Human donor matrix
    • Immune cells
    • Human reference epigenomes
    • Mouse reference epigenomes
    • Mouse development matrix
    • Protein knockdown (Degron)
    • Search by region
    • Publications
    • RNA-Get (gene expression)
    • About
    • Visualize (SCREEN)
    • Encyclopedia browser
    • Search
    • Methods
    • Antibodies
    • Genome references
    • Assays and standards
    • Glossary
    • File formats
    • Software tools
    • Pipelines
    • Data organization
    • Release policy
    • Schemas
    • Using the portal
    • Cart
    • REST API
    • Citing ENCODE
    • FAQ
    • Project Overview
    • Collaborations
    • ENCODE workshops
    • About the DCC
    • Listed carts
  1. Pipelines
  2. MPRA

Shendure Lab MPRAflow Pipeline

Status
released
Title
Shendure Lab MPRAflow Pipeline
Assays
MPRA
Description
This pipeline processes sequencing data from Massively Parallel Reporter Assays (MPRA) to create count tables for candidate sequences tested in the experiment.
Lab
Jay Shendure, UW
Award PI
Jay Shendure, UW

Pipeline schematic

  • Citing ENCODE
  • Privacy
  • Contact
  • Sign in / Create account
  • ENCODE
  • Stanford University
  • Creative Commons

©2024 Stanford University