Summary for ENCSR217ARS
doi:10.17989/ENCSR217ARS
Summary
- Status
- released
- Description
- Reference epigenome for human H9-derived hepatocyte
- Donor diversity
- single
- Assay
- microRNA-seq, DNase-seq, ChIP-seq, small RNA-seq, polyA plus RNA-seq, whole-genome shotgun bisulfite sequencing, RNA-seq
- Target
- H3K9me3, H3K4me3, H3K4me1, H3K27ac, H3K27me3, H3K36me3, CTCF
- Biosample summary
- Homo sapiens hepatocyte originated from H9
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR217ARS
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR859HWB | polyA plus RNA-seq | Homo sapiens hepatocyte originated from H9 | Barbara Wold, Caltech | released | ||
| ENCSR616TOP | microRNA-seq | Homo sapiens hepatocyte originated from H9 | Ali Mortazavi, UCI | released | ||
| ENCSR252QYR | ChIP-seq | CTCF | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR351IPU | whole-genome shotgun bisulfite sequencing | Homo sapiens hepatocyte originated from H9 | Richard Myers, HAIB | released | ||
| ENCSR637RLN | ChIP-seq | H3K27me3 | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR034BEQ | ChIP-seq | H3K36me3 | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR689QUB | ChIP-seq | H3K4me1 | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR442ZOI | ChIP-seq | H3K4me3 | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR507UDH | ChIP-seq | H3K27ac | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR758GMX | ChIP-seq | H3K9me3 | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released | |
| ENCSR908ZAS | RNA-seq | Homo sapiens hepatocyte originated from H9 | Thomas Gingeras, CSHL | released | ||
| ENCSR364MFN | DNase-seq | Homo sapiens hepatocyte originated from H9 | John Stamatoyannopoulos, UW | released | ||
| ENCSR673PND | small RNA-seq | Homo sapiens hepatocyte originated from H9 | Thomas Gingeras, CSHL | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR107PGG | input library | Homo sapiens hepatocyte originated from H9 | Bradley Bernstein, Broad | released |